TSD Search
Search Area
5' TSD
3' TSD
Offset from 5' end, nt:
Range, nt:
Offset from 3' end, nt:
Range, nt:
┌search area┐ ┌search area┐
5'├────────────────────────────────Sequence────────────────────────────────┤3'
└─offset─┴───range───┘ └───range───┴─offset─┘
TSD Parameters
1st subrepeat min length, nt:
Max length of spacers between subrepeats, nt:
2nd subrepeat min length, nt:
Max length of spacers between subrepeats, nt:
3rd subrepeat min length, nt:
Min length of total match (w/o gaps), nt:
Max total mismatch length, nt:
Max number of TSDs:
Enter sequence(s) (FASTA format):
or choose a local FASTA sequence file:
or