TSD Search

Search Area  
5' TSD   3' TSD
Offset from 5' end, nt: Range, nt:   Offset from 3' end, nt: Range, nt:

           ┌search area┐                              ┌search area┐
5'├────────────────────────────────Sequence────────────────────────────────┤3'
  └─offset─┴───range───┘                              └───range───┴─offset─┘

TSD Parameters  
1st subrepeat min length, nt: Max length of spacers between subrepeats, nt: 2nd subrepeat min length, nt: Max length of spacers between subrepeats, nt: 3rd subrepeat min length, nt:
Min length of total match (w/o gaps), nt: Max total mismatch length, nt: Max number of TSDs:

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