SINE    Length
  (w/o tail)		          Taxon         
Distribution Copy number Structure
tRNA >80/75/70%
LINE [clade]
Tail
Features
Refs
5S-Sauria236 Reptilia reptiles green anole
(Anolis carolinensis)		 1.6×102 5S‑???~~~     ACCTTT   Piskurek 2009
AC1
(SINE_FR2, SINE_TE)		380 Actinopterygii ray-finned fishes fugu & medaka2×102
(fugu)
3×103
(medaka)		 tRNA‑CORE‑???‑LINE~~~ Val Gly Glu   TGAR V-domain Ogiwara 2002
AcaNinDC
(Aca-Nin-DC-SINE)		513 Gastropoda gastropod molluscs sea hares Aplysia californica and A. kurodai 5.5×104 tRNA‑???‑CORE‑LINE~~~ Arg Val I-3 [nimb] CA2-5 Deu-domain Piskurek 2011
ACar-1
(SINE2-1_ACar)		269 Reptilia reptiles green anole
(Anolis carolinensis)		 3.9×104 tRNA‑???‑LINE~~~   Vingi_ACar [Vingi] A   Jurka 2010
AFC
(SINE_AFC)		310 Actinopterygii ray-finned fishes African cichlids2×103–
2×104		 tRNA‑CORE‑???‑LINE~~~ Asn Arg CiLINE2 [L2] ATT CORE domain Takahashi 1998
AFC-2
(SINE2-1_AFC)		 275 Actinopterygii ray-finned fishes African cichlids 2.4×103 0 tRNA‑???‑LINE~~~ Lys Asn Ile Tyr ? [L2] CCATTTA   Kojima 2010
AFC-3
(SINE3_AFC)		 215 Actinopterygii ray-finned fishes African cichlids 8×102 0 tRNA‑???~~~ Phe Gly   ATT
CT2-3		   Jurka 2010
AfroLA
(AFRO_LA, PSINE1)		158 Mammalia mammals elephants and mammoths
(Proboscidea)		7×105
(mammoth)		 tRNA‑LINE~~~ Asn Gln Bov-B [RTE] T   Jurka 2006, Zhao 2009
AfroSINE
(AfroSINEn)		230 Mammalia mammals afrotherians8×105 tRNA‑LINE~~~ Asn Bov-B [RTE] TTG   Nikaido 2003
Alu282 Mammalia mammals primates1.1×106
(human)
1.5×105
(galago)		 7SL~7SL~~~   L1 [L1] A dimer Deininger 1981
Anolis SINE2 456 Reptilia reptiles Green anole
(Anolis carolinensis)		 1.4×104 tRNA‑???‑LINE~~~   Anolis L2 [L2] TAAA   Piskurek 2009
Asu1 407 Insecta insects mosquito (Armigeres subalbatus) 5.1×103 tRNA‑ANRt‑???~~~ Val Gly   AAAT   SINEBase
Asu2 313 Insecta insects mosquito (Armigeres subalbatus) 6 ×103 tRNA‑???~~~ Lys Thr Val   AAG   SINEBase
Au
(SINE2-1_ZM)		180 Angiospermae flowering plants Poaceae, Fabaceae, Solanaceae & Gramineae 1×104
(Aegilops)
 1×102
(other plants)		 tRNA‑???~~~     T   Fawcett 2006, Yasui 2001
Ava III 260 Actinopterygii ray-finned fishes Salmonoidei1×102 tRNA‑CORE‑???~~~ Ile Met Ini   AT CORE domain Kido 1994, Matveev 2009
B1
(pB1, pB1dx, STR1)		135 Mammalia mammals rodents8×103-
6.5×105		 7SL~~~   L1 [L1] A quasidimer Krayev 1980, Veniaminova 2007
B1-dID
(STRIDE*)		200 Mammalia mammals Gliridae, Sciuridae & Aplodontidae1.1×105
(dormouse) 4.5×104
(squirrel)
2.8×104
(beaver)		 7SL~tRNA~~~   L1 [L1] A dimer Kramerov 2001, Veniaminova 2007
B2
(B2s, B2l, B3, SINEB2)		185 Mammalia mammals Muridae, Cricetidae, Spalacidae & Rhizomiidae3.5×105 tRNA‑???~~~ Thr Cys Ala Arg Lys L1 [L1] A T+ Krayev 1982
B4
(RSINE2, ID_B1)		278 Mammalia mammals different rodent families4×105
(mouse)
3.6×105
(rat)		 tRNA~7SL~~~ Ala Val Thr L1 [L1] AC dimer Lee 1998, Veniaminova 2007
BbeA1 387 Leptocardii lancelets lancelets 720
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Asn Met Gln Val Cys Thr Arg Asn Tyr Gly Ala Lys CR1-1_BF [CR1] AAAC CORE domain, Deu-domain Kosushkin 2020
BbeA2 367 Leptocardii lancelets lancelets 82
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Asn Gln Ala Met Ser Thr CR1-7_BF [CR1] CCAAGA CORE domain, Deu-domain Kosushkin 2020
BbeA3 372 Leptocardii lancelets lancelets 46
(B. belcheri) 		tRNA‑CORE‑???~~~ Asn Ala Gln Met Ser Cys Ile Thr   AAGAC CORE domain, Deu-domain Kosushkin 2020
BbeA4 372 Leptocardii lancelets lancelets 20
(B. belcheri) 		tRNA‑CORE‑???~~~ Asn Met Ala Gln   AAG CORE domain, Deu-domain Kosushkin 2020
BbeA5 389 Leptocardii lancelets lancelets 669
(B. belcheri) 		tRNA‑CORE‑LINE~~~ CysThr Gln Ala Tyr Cys CR1-14_BF CR1-16_BF CR1-27_BF CR1-47_BF [CR1] AAAT CORE domain, Deu-domain Kosushkin 2020
BbeA6 446 Leptocardii lancelets lancelets 80
(B. belcheri) 		tRNA‑CORE‑???~~~ Ser Cys Asn Ala Met Gly Pro   YAA CORE domain, Deu-domain Kosushkin 2020
BbeA8 407 Leptocardii lancelets lancelets 155
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Gly Asp Gln Val CR1-14_BF CR1-16_BF CR1-27_BF CR1-47_BF [CR1] AAAT CORE domain, Deu-domain Kosushkin 2020
BbeA9 514 Leptocardii lancelets lancelets 71
(B. belcheri) 		tRNA‑CORE‑???~~~ Asn Gln Lys Arg Met Ile Leu   ATG CORE domain, Deu-domain Kosushkin 2020
BbeB1 244 Leptocardii lancelets lancelets 1.2×103
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Arg Met CR1-24_BF;
CR1 33_BF CR1 37_BF CR1-23_BF [CR1]		 AAATC CORE domain Kosushkin 2020
BbeB2 255 Leptocardii lancelets lancelets 607
(B. belcheri) 		tRNA‑CORE‑???~~~ Asn Cys Thr Arg Ile Ser   Tn CORE domain Kosushkin 2020
BbeB3 409 Leptocardii lancelets lancelets 797
(B. belcheri) 		tRNA‑CORE‑???~~~ Gly Glu Thr   ATT CORE domain Kosushkin 2020
BbeB4 194 Leptocardii lancelets lancelets 581
(B. belcheri) 		tRNA‑CORE‑???~~~ Cys Ser Asn Tyr Thr Arg   A2-4CC CORE domain Kosushkin 2020
BbeB5 215 Leptocardii lancelets lancelets 198
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Asn Thr Gln Ser CR1-7_BF [CR1] AAG CORE domain Kosushkin 2020
BbeB6 288 Leptocardii lancelets lancelets 575
(B. belcheri) 		tRNA‑CORE‑ANRt‑???~~~ Thr Ser   ACCTTT CORE domain Kosushkin 2020
Bfl1
(BflSINE1)		 363 Leptocardii lancelets lancelets 145
(B. belcheri) 		tRNA‑CORE‑LINE~~~   Crack-16_BF [Crack] CCAAA
CAAA		 CORE domain, Deu-domain Nishihara 2006, Kosushkin 2020
Bfl2
(BflSINE2)		 274 Leptocardii lancelets lancelets 1.5×103
(B. belcheri) 		tRNA‑CORE‑???~~~ Ala Gly   C1-2T2-3 Deu-domain Nishihara 2016, Kosushkin 2020
Bfl4b 249 Leptocardii lancelets lancelets 6.3×103
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Thr Arg Ser CR1-28_BF;
CR1-17_BF CR1-51_BF CR1-54_BF [CR1]		 A1-2
A3TC 		CORE domain Kosushkin 2020
Bfl7 551 Leptocardii lancelets lancelets 49
(B. belcheri) 		tRNA‑CORE‑LINE~~~ Asn Lys Gln Arg Met Ile Val RTE-18_BF RTE-5_BF [RTE] TACA CORE domain, Deu-domain Kosushkin 2020
Bm1 430 Insecta insects silkworm
(Bombyx mori)		 1.5×105 tRNA‑???‑LINE~~~   Zenon_Bm [CR1] A   Adams 1986, Xu 2010
BmSE249 Insecta insects silkworm
(Bombyx mori)		 5.2×103 tRNA‑LINE~~~ Val R1 [R1] ATTT   Xu 2010
Bovc-Ta2 315 Mammalia mammals Bovidae
(cattle, goats & sheep)		2×104 tRNA‑LINE‑tRNA‑LINE~~~ Gly Cys Thr Asp
Gly Lys Thr		 Bov-B [RTE] AT dimer Jurka 2005
Bov-tA
(Bov-tAn)		204 Mammalia mammals Bovidae
(cattle, goats & sheep)		2×105 tRNA‑LINE~~~ Gly Lys Thr Asp Bov-B [RTE] AC   Lenstra 1993
BraS-I 134 Angiospermae flowering plants Brassicaceae 4.6×102
(Arabidopsis lyrata)
3.2×101
(Arabidopsis thaliana)		 tRNA‑???~~~     A   Wenke 2011
C
(CSINEn)		325 Mammalia mammals Lagomorpha 5.4×105 tRNA‑CORE‑???~~~   L1 [L1] A β-domain, (TC)n, T+ Cheng 1984, Krane 1991
CAN
(SINEC*, MVB2)		160 Mammalia mammals Carnivora2×105 tRNA‑???~~~ Ala L1 [L1] A (TC)n, T+ Lavrent'eva 1989, Vassetzky 2002
CELE45250 Nematoda roundworms Caenorhabditis elegans2×102 tRNA‑???~~~   RTE1 [RTE] T   Jurka 2005
CHRS
(CHR-1, CHR-2, CHRS-S, SINE2-1_BT, CHRL, CHRL_BT, SINE2-1_BT, SINE2-2_BT, SINE2-3_BT)		321
.(120-340)		 Mammalia mammals cetaceans, hippopotamuses, ruminants & suiforms104-105 tRNA‑???~~~ Glu Pro Ala Gly L1 [L1] A quasioligomer; T+ Shimamura 1999, Nikaido 2001, Jurka 2005, Vassetzky 2013
Cisc-1290 Tunicata tunicates sea squirt
(Ciona spp.)		 4×104 tRNA‑CORE‑???~~~ Thr Trp Ile   CATT CORE domain Simmen 2000
CM-1
(SINEX-1_CM, SINE2-1_CM)		 308 Chondrichthyes cartilaginous fishes ghost shark
(Callorhinchus milii)		 6.5×104 tRNA‑???‑LINE~~~ Ala Cys Thr CR1-2_CM [CR1] ATT   Jurka 2005
CQ-1
(SINE2-1_CQ)		 662 Insecta insects mosquito
(Culex pipiens)		 5.5×102 tRNA‑???‑ANRt‑???~~~ Asn
  GATTA dimer Kojima 2011
CQ-2
(SINE2-2_CQ)		 238 Insecta insects mosquito
(Culex pipiens)		 1.4×103 tRNA‑???~~~ Arg Met Ini   T   Kojima 2011
CQ-3
(SINE3_CQ)		 404 Insecta insects mosquito
(Culex pipiens)		 2.5×103 tRNA‑CORE‑???~~~     T α-domain Kojima 2011
CQ-4
(SINE4_CQ)		 583 Insecta insects mosquito
(Culex pipiens)		 1.4×102 tRNA‑???‑ANRt‑???~~~ Gly Thr Arg
Arg Trp Asn Thr Met		   GATTA dimer Kojima 2011
CQ-5
(SINE5_CQ)		 237 Insecta insects mosquito
(Culex pipiens)		 8.4×102 tRNA‑CORE‑???‑ANRt‑???~~~     T dimer; α-domain Kojima 2011
CQ-6
(SINE6_CQ)		 208 Insecta insects mosquito
(Culex pipiens)		 3.1×103 tRNA‑CORE‑???~~~     T α-domain Kojima 2011
Cre-1
(SINEX-1_CR)		520 Chlorophyta green algae Chlamydomonas reinhardtii 1×102 tRNA‑???~~~     ATT   Kapitonov 2004
Cre-3
(SINEX-3_CR)		496 Chlorophyta green algae Chlamydomonas reinhardtii 30 tRNA‑???‑LINE~~~   L1-1_CR [?] A   Kapitonov 2004
Cre-4
(SINEX-4_CR)		500 Chlorophyta green algae Chlamydomonas reinhardtii 30 tRNA‑???‑LINE~~~     ATT   Kapitonov 2004
Cry
(pol III/SINE, Hirt)		200 Reptilia reptiles Cryptodira
(straightneck turtles)		5×105 tRNA‑LINE~~~ Thr Lys PsCR1 [CR1] AT   Endoh 1990, Sasaki 2004
CteNinDC
(Cte-Nin-DC-SINE)		333 Polychaeta polychaete annelida polychaete worms Capitella teleta and C. capitata 5.9×103 tRNA‑???‑CORE~~~     TCAC Deu-domain Piskurek 2011
CucuS-I 206 Angiospermae flowering plants Cucurbitaceae 7.1×102
(Cucumis sativus)		 tRNA‑???‑LINE~~~   ? [L1] A   Wenke 2011
CucuS-II 98 Angiospermae flowering plants Cucurbitaceae 8.7×102
(Cucumis sativus)		 tRNA‑???~~~ Cys   A   Wenke 2011
CYN-I
(t-SINE)		79 Mammalia mammals flying lemur
(Cynocephalus)		1×106
(with CYN-II & CYN-III)		 tRNA~~~ Ile Thr L1 [L1] A simple Piskurek 2003, Schmitz 2003
CYN-II154 Mammalia mammals flying lemur
(Cynocephalus)		1×106
(with CYN-I & CYN-III)		 tRNA~tRNA~~~   L1 [L1] A dimer Piskurek 2003, Schmitz 2003
CYN-III203 Mammalia mammals flying lemur
(Cynocephalus)		1×106
(with CYN-I & CYN-II)		 tRNA~tRNA~tRNA~~~   L1 [L1] A trimer Piskurek 2003, Schmitz 2003
DANA370 Actinopterygii ray-finned fishes zebrafish
(Danio)		 4.5×105 tRNA‑CORE‑???‑LINE~~~ Asn Cys ZfL3 TGAA V-domain Izsvak 1996
DAS-I76 Mammalia mammals nine-banded armadillo
(Dasypus novemcinctus)		 2.9×104 tRNA~~~ Ala Val Gly L1 [L1] A simple Borodulina 2005, Churakov 2005
DAS-IIa208 Mammalia mammals nine-banded armadillo
(Dasypus novemcinctus)		 6.5×104
(with DAS-IIb)		 tRNA~tRNA~~~
Ala		 L1 [L1] A dimer Churakov 2005
DAS-IIb355 Mammalia mammals nine-banded armadillo
(Dasypus novemcinctus)		 6.5×104
(with DAS-IIa)		 tRNA‑???‑tRNA‑???~~~   L1 [L1] A dimer; T+ Churakov 2005
DAS-III387 Mammalia mammals nine-banded armadillo
(Dasypus novemcinctus)		 2.2×105 tRNA‑???~~~ Ala Gly L1 [L1] A T+ Churakov 2005
DIP
(B2L_S)		190 Mammalia mammals Dipodidae & Zapodidae1×105 tRNA‑???~~~ Ala L1 [L1] A (TC)n, T+ Serdobova 1998
DR-1
(SINE_DR1)		 244 Actinopterygii ray-finned fishes zebrafish
(Danio)		 4.8×103 tRNA‑???‑LINE~~~   ? [L2] AAATGT   Jurka 2002
DR-2
(SINE2-1_DR, CypS-I)		174 Actinopterygii ray-finned fishes zebrafish
(Danio)		 5×103 tRNA‑???~~~     A   Jurka 2002
EbuSINE1345 Myxini hagfish hagfish
(Eptatretus burgeri)		  0 tRNA‑CORE‑???~~~     GAA Deu-domain Nishihara 2006
EbuSINE2345 Myxini hagfish hagfish
(Eptatretus burgeri)		  0 tRNA‑CORE‑???~~~       Deu-domain Nishihara 2006
EC-1
(SINE2-1_EC)		398 Mammalia mammals horse
(Equus caballus)		 7.7×103 tRNA‑???‑LINE~~~Glu Bov-B [RTE] AAC   Jurka 2008
ERE-A
(ERE-1x, ERE-4x)		 251 Mammalia mammals horses
(Equus spp.)		 9×104 tRNA‑???~~~   L1 [L1] A T+ Sakagami 1994, Jurka 2005, Vassetzky 2013
ERE-B
(ERE-2x, ERE-3x)		235
(176)		 Mammalia mammals horse
(Equus caballus)		 3.8×105 tRNA‑???~~~Glu L1 [L1] A quasidimer Jurka 2008, Vassetzky 2013
ERI-1
(Erine1)		126 Mammalia mammals hedgehogs
(Erinaceidae)		1×105 tRNA‑???~~~ Ala Gly Cys Thr L1 [L1] A (TC)n, T+ Borodulina 2001
ERI-2
(Erine2)		186 Mammalia mammals hedgehogs
(Erinaceidae)		1×105 tRNA‑???~~~   L1 [L1] A (TC)n, T+ Borodulina 2001
EuphS-I 83 Angiospermae flowering plants certain Euphorbiaceae 2.5×103
(Manihot esculenta)
1.3×102
(Ricinus communis)		 tRNA~~~ Thr   A simple Wenke 2011
FabaS-I
(MT_SINE-1)		 131 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 2.8×103 tRNA‑???~~~     A   Gadzalski 2011
FabaS-II
(SINE1_MT, MT-1)		 116 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 2.2×103 tRNA‑???~~~   ? [L1] A   Jurka 2007
FabaS-III
(MT_SINE-3)		 166 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 6.9×102 tRNA‑???‑LINE~~~   ? [L1] A   Gadzalski 2011
FabaS-IV 205 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 6.9×102
tRNA‑???‑tRNA~~~     A dimer Wenke 2011
FabaS-V 185 Angiospermae flowering plants certain Fabales 2.4×102
(Medicago truncatula)
~4×101
(Glycine max & Lotus japonicus)		 tRNA‑???~~~ Thr, Gln, Glu. Pro   A   Wenke 2011
FabaS-VI 185 Angiospermae flowering plants certain Fabales 1.4×103
(Cajanus cajan)
4.6×102
(Medicago truncatula)		 tRNA‑???~~~ Thr   A   Wenke 2011
FabaS-VII 124 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 6.9×103
tRNA‑???~~~ Ala, Val   A   Wenke 2011
FabaS-VIII 115 Angiospermae flowering plants barrel medic
(Medicago truncatula)		 1.6×103
tRNA‑???~~~     A   Wenke 2011
FabaS-IX 120 Angiospermae flowering plants certain Fabales 3×103
(Glycine max)
2.8×102
(Cajanus cajan & Medicago truncatula)
tRNA‑???~~~     A   Wenke 2011
Fc-1
(tSINE_Fc)		 105 Mammalia mammals Carnivora4×104-
6×104
(cat, dog, panda)		 tRNA~~~ Lys Ile Met L1 [L1] A simple, T+ Jurka 2008
Feilai275 Insecta insects yellow fever mosquito
(Aedes aegypti)		 6×104 tRNA‑???~~~ Leu Juan-A [Jockey] GAA   Tu 1999
FR-1
(SINE_FR1)		273 Actinopterygii ray-finned fishes fugu
(Takifugu rubripes)		 3×102 tRNA‑???~~~     A   Smit 2002
GA-1
(SINE2-1_GA)		 294 Actinopterygii ray-finned fishes stickleback
(Gasterosteus aculeatus)		 3.4×102 tRNA‑CORE‑???‑LINE~~~   ? [L2] CCATTTA CORE domain Kojima 2010
Gecko188 Insecta insects yellow fever mosquito
(Aedes aegypti)		 7.2×103 tRNA‑CORE‑???~~~ Val Gly MosquI [clade I] A
CCAA
etc.		 α-domain Tu 2004
HaSE1
(HzIS1)		 375 Insecta insects certain owlet moths
(Helicoverpa & Heliothis)		   tRNA‑???‑CORE‑LINE~~~ Ala HaRTE1 [RTE] GAT Deu-domain Wang 2012
HaSE2
(HaSE2_DP)		 284 Insecta insects certain owlet moths
(Helicoverpa, Heliothis & Spodoptera) & monarch butterfly (Danaus plexippus)		 1.6×103
(Danaus plexippus)		 tRNA‑???~~~     GAT   Wang 2012
HaSE3 354 Insecta insects certain owlet moths
(Helicoverpa, Heliothis, Trichoplusia & Mamestra)		   5S‑???‑CORE‑LINE~~~   HaRTE1 [RTE] GAT Deu-domain Wang 2012
HE1340 Chondrichthyes cartilaginous fishes higher elasmobranches103-106 tRNA‑CORE‑???‑LINE~~~ Gly Ala HER-1 [CR1] NATTCTAT V-domain Ogiwara 1999
Hpa I
(OM2)		 200 Actinopterygii ray-finned fishes Salmonoidei102-104 tRNA‑CORE‑LINE~~~ Ile Thr Cys RSg-1 [L2] AT CORE domain Kido 1991, Matveev 2009
ID
(BC1, CAVID, MUSID, RDRE1_RN, RNALUIII, STRID1)		75 Mammalia mammals rodents2.5×104-
5×105		 tRNA~~~ Ala Val Gly Thr L1 [L1] A simple Milner 1984
Idio1259 Cephalopoda cephalopod molluscs Japanese pygmy squid
(Idiosepius paradoxus)		  0 tRNA‑CORE‑???~~~     CAAA Ceph-domain Akasaki 2010
Idio2425 Cephalopoda cephalopod molluscs Japanese pygmy squid
(Idiosepius paradoxus)		  0 tRNA‑CORE‑???~~~     TGA Ceph-domain Akasaki 2010
IDL-Geo
(DIPODE1, DIPODE2)		190 Mammalia mammals Geomyidae & Heteromyidae1×105 tRNA~tRNA~~~ Ala Val Thr
L1 [L1] A dimer Gogolevsky 2006
ID-Spe
(STRID2, STRID3, STRID4)		126 Mammalia mammals Sciuromorpha1.9×105 tRNA‑???~~~ Ala Val Gly Cys L1 [L1] A quasidimer Churakov 2010
IscNinDC
(Isc-Nin-DC-SINE)		290 Arachnida arachnids hard-bodied ticks Ixodes scapularis and I. ricinus 2.2×104 tRNA‑CORE‑???‑~~~     T Deu-domain, two A-boxes Piskurek 2011
Lam1230 Hyperoartia lampreys lamprey
(Lethenteron reissneri)		 2.4×103 tRNA‑CORE‑???~~~     GCA V-domain Ogiwara 2002
LgiNinDC
(Lgi-Nin-DC-SINE)		352 Gastropoda gastropod molluscs true limpets Lottia gigantea and L. scutum 3.1×103 tRNA‑???‑CORE‑???~~~ AlaThr Lys   CAT2-3 Deu-domain Piskurek 2011
Lj-1
(Lj_SINE-1)		 135 Angiospermae flowering plants Lotus japonicus & Medicago truncatula 3.1×103
(Lotus japonicus)
3.9×101
(Medicago truncatula)		 tRNA‑???~~~     A   Gadzalski 2011
Lj-2
(Lj_SINE-2)		 191 Angiospermae flowering plants Lotus japonicus 3.3×102 tRNA‑tRNA‑???~~~     A dimer Gadzalski 2011
Lj-3
(Lj_SINE-3)		 182 Angiospermae flowering plants Lotus japonicus 5.5×102 tRNA‑???‑LINE~~~ Arg ? [L1] A   Gadzalski 2011
LF
(LFSINE_Vert)		453 Vertebrata Mammalia Aves Reptilia Amphibia Sarcopterygii vertebrates mammals birds reptiles amphibians lobe-finned fishes coelacanths & tetrapods
(Sarcopterygii)		105
(Latimeria menadoensis)
3×102
(mammals) 		tRNA‑???~~~     A   Bejerano 2006
Lm1
(SGRP1)		200 Insecta insects Locusta, Schistocerca & Chorthippus6×105
(locust)		 tRNA‑???~~~ Leu   T   Bradfield 1985
LmeSINE1314 Sarcopterygii lobe-finned fishes coelacanth
(Latimeria menadoensis)		  0 tRNA‑CORE‑LINE~~~ Gly ? [L2] AACC Deu-domain, α-domain Nishihara 2006
Lun1291 Sarcopterygii lobe-finned fishes lungfish
(Lepidosiren paradoxa)		 3×105 tRNA‑CORE‑???‑LINE~~~ Gly LfR1 GAACCTAT V-domain; (TC)n Ogiwara 2002
Mac1
(WALLSI2)		311 Mammalia mammals kangaroos
(Macropodoidea)		4.5×104
(wallaby)		 tRNA‑CORE~~~     CA CORE domain Munemasa 2008
Mad-1
(SINE-1_Mad)		 159 Angiospermae flowering plants apple
(Malus × domestica)		 9.5×103 tRNA‑ANRt~~~   L1 [L1] A dimer Jurka 2010
Mad-2
(SINE-2_Mad, SINE-4_Mad)		193 Angiospermae flowering plants apple
(Malus × domestica)		 1×103 tRNA‑???~~~   L1 [L1] A   Kojima 2010
MamSINE1 286 Mammalia mammals mammals5×102
(platypus)		 tRNA‑CORE‑???~~~ Ile Ala RTE1 [RTE] CA β-domain Jurka 2005, Warren 2008
Mar1
(SINE1_MD)		 246 Mammalia mammals marsupials
(Metatheria)		5×105
(opossum)		 tRNA‑CORE‑LINE~~~   Bov-B [RTE] CAA CORE domain Gilbert 2000
Mar3
(WSINE1)		128 Mammalia mammals marsupials
(Metatheria)		5.3×104
(wallaby)		 tRNA‑CORE~~~ Thr L1 [L1] A CORE domain Munemasa 2008
MARE3 172 Mammalia mammals mammals1×102
(human)
1.4×103
(opossum)		 tRNA‑CORE~~~ Ile Lys   A β-domain Gentles 2007
MEG-RL
(Meg_PVa)		197 Mammalia mammals megabats
(Megachiroptera)		1×104 5S‑???~~~   L1 [L1] A quasioligomer Gogolevsky 2009
MEG-RS120 Mammalia mammals megabats
(Megachiroptera)		7×103 5S~~~   L1 [L1] A simple Gogolevsky 2009
MEG-T2212 Mammalia mammals megabats
(Megachiroptera)		4×103 tRNA‑???~~~ Val Ile Glu Gln Met L1 [L1] A   Gogolevsky 2009
MEG-TR182 Mammalia mammals megabats
(Megachiroptera)		5×103 tRNA‑5S~~~ Val Ala Met Ile Thr L1 [L1] AAT dimer Gogolevsky 2009
MEN259 Mammalia mammals squirrels Menetes & Callosciurus 1×105 tRNA~7SL~~~ Ala Thr Gly Val L1 [L1] A dimer Serdobova 1998
Mon1270 Mammalia mammals monotremes2×106
(platypus)		 tRNA‑CORE‑LINE~~~ Arg Thr L2 [L2] TTA CORE domain Gilbert 2000, Warren 2008
MyrSINE83 Mammalia mammals anteaters
(Myrmecophagidae)		  0 tRNA~~~ Gly L1 [L1] A simple Nishihara 2007
NV-1
(SINE2-1_NV)		 257 Anthozoa sea anemones and corals starlet sea anemone
(Nematostella vectensis)		 95 tRNA‑???‑LINE~~~ Glu ? [L2] T   Jurka 2005
NV-2
(SINE2-2_NV)		 324 Anthozoa sea anemones and corals starlet sea anemone
(Nematostella vectensis)		 70 tRNA‑CORE‑???~~~     ATTT V-domain Jurka 2005
NV-3
(SINE2-3_NV)		 376 Anthozoa sea anemones and corals starlet sea anemone
(Nematostella vectensis)		 60 tRNA‑???‑CORE‑???~~~     A α-domain Jurka 2005
NymS-I 131 Angiospermae flowering plants spatterdock
(Nuphar advena)		   tRNA‑LINE~~~   L1 [L1] A   Wenke 2011
Oegop371 Cephalopoda cephalopod molluscs Oegopsida1×104 tRNA‑CORE‑???~~~     AGC Ceph-domain Akasaki 2010
OK405 Cephalopoda cephalopod molluscs Octopodidae8.5×104 tRNA‑???~~~     AT (TR)n Ohshima 1994
Opo-1
(SINE-1_MD, SINE-2_MD)		193 Mammalia mammals American marsupials2.8×105 tRNA‑CORE‑???~~~ Ser Trp Thr   A CORE domain Gilbert 2000, Munemasa 2008
OR1390 Cephalopoda cephalopod molluscs Octopus spp.3.3×104 tRNA‑???~~~ Thr Arg   AT   Ohshima 1994
OR2270 Cephalopoda cephalopod molluscs Octopus spp.2.8×104 tRNA‑CORE‑???~~~ Arg   AT CORE domain Ohshima 1994
OS469 Actinopterygii ray-finned fishes Salmonoidei  0 5S‑tRNA‑CORE‑LINE~~~   RSg-1 [L2] TAAA dimer; Deu-domain, β-domain Nishihara 2006, Matveev 2009
OsSN1
(F524)		 285 Angiospermae flowering plants rice
(Oryza sativa)		 5.7×102 tRNA‑???~~~ Ala Val Thr   A   Jiang 2002, Tsuchimoto 2008
OsSN2
(SINE9_OS, SINE2-11_SBi, SINE2-12_SBi)		283 Angiospermae flowering plants rice & sorghum
(Oryza sativa & Sorghum bicolor)		 1.2×103
(rice)
2.2×102
(sorghum)		 tRNA‑???~~~     A   Gentles 2005, Tsuchimoto 2008
OsSN3
(CASINE)		 176 Angiospermae flowering plants rice
(Oryza sativa)		7.1×102 tRNA‑???~~~ Ala L1 [L1] A   Jiang 2002, Tsuchimoto 2008
Otri 252 Insecta insects mosquito
Ochlerotatus triseriatus		   tRNA‑CORE‑???~~~     A α-domain Luchetti 2013
Pca-1
(SINE2-1_Pca)		 330 Mammalia mammals hyrax
(Procavia capensis)		 9.3×103 tRNA‑???‑LINE~~~ Gly Glu Asp Pro Bov-B [RTE] AAC   Jurka 2009
Ped-1231 Mammalia mammals springhare
(Pedetes capensis)		 6×104 5S‑LINE~~~   Bov-B [RTE] CAA   Gogolevsky 2008
Ped-2185 Mammalia mammals springhare
(Pedetes capensis)		 2.5×105 tRNA‑LINE~~~ Ala Phe Cys Ile Val Met Lys Bov-B [RTE] CAA   Gogolevsky 2008
PinS-I 227 Pinophytaconifers coniferous plants spruces
(Picea spp.)		 2.7×102
tRNA‑???~~~     A   Wenke 2011
PoaS-I 156 Angiospermae flowering plants purple false brome
(Brachypodium distachyon)		 1.4×102
tRNA‑???~~~     A   Wenke 2011
PoaS-II 156 Angiospermae flowering plants purple false brome
(Brachypodium distachyon)		 1.4×102
tRNA‑LINE~~~   L1 [L1] A   Wenke 2011
PRE-1246 Mammalia mammals pigs and peccaries106
(pig)		 tRNA‑???~~~ Thr Lys L1 [L1] A quasidimer Singer 1987
p-SINE1
(p-SINE2, p-SINE3, SINE1R5_OS, SINE1OS, SINE6_OS, SINE8_OS, SINE16_OS)		115 Angiospermae flowering plants rice
(Oryza genus)		 6×103
(rice) 		tRNA‑???~~~     T   Mochizuki 1992, Motohashi 1997
PTr-1
(SINE2-1_PTr, SaliS-I)		 187 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 4.1×103 tRNA‑???‑LINE~~~   ? [L1] A   Jurka 2010
PTr-2
(SINE2-2_PTr, SaliS-II)		 161 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 4×103 tRNA‑???‑LINE~~~   ? [L1] A   Jurka 2010
PTr-3183 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 2.6×102 tRNA‑???‑LINE~~~   ? [L1] A   SINEBase
Ras1281 Actinopterygii ray-finned fishes Rasbora pauciperforata 2×102 tRNA‑CORE‑???~~~ Val   YAAA V-domain Ogiwara 2002
Rhin-1190 Mammalia mammals bat families Rhinolophidae & Hipposideridae  0 tRNA‑???~~~ Ile Ala Met L1 [L1] A T+ Borodulina 2005
RSINE1 139 Mammalia mammals mouse & rat3×104
(mouse)
1.6×104
(rat)		 tRNA‑???~~~ Ala L1 [L1] AC   Jurka 2005
Ruka230 Arachnida arachnids ixodid ticks6×104
(Rhipicephalus appendiculatus)		 tRNA‑???~~~ Glu Pro Gly   TCAA   Sunter 2008
SacSINE1454 Chondrichthyes cartilaginous fishes dogfish shark
(Squalus acanthias)		  0 tRNA‑CORE‑LINE~~~ Arg Lys Asn ? [L2] T Deu-domain Nishihara 2006
SaliS-III 168 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 4.9×102
tRNA‑???~~~     A   Wenke 2011
SaliS-IV 185 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 3.2×102
tRNA‑???‑LINE~~~   ? [L1] A   Wenke 2011
SaliS-V 268 Angiospermae flowering plants black cottonwood
(Populus trichocarpa)		 7×102
tRNA‑???‑tRNA‑???‑LINE~~~ Ala
 ? [L1] A dimer Wenke 2011
Sauria
(Squam1, ACA, AFE, POM, VIN)		350 Reptilia reptiles scaled reptiles
(Squamata)		1.3×105 tRNA‑???~~~     ACCTTT   Kosushkin 2006, Piskurek 2006
SB1
(S1)		171 Angiospermae flowering plants Brassica oleracea 330 tRNA‑???~~~   ? [L1] A   Deragon 1994
SB2
(RAthE1, SN2)		149 Angiospermae flowering plants Arabidopsis thaliana & Brassica oleracea 144
(Arabidopsis)
165
(Brassica)		 tRNA‑???~~~   ? [L1] A   Lenoir 2001, Myouga 2001
SB3
(RAthE2, RBolE2)		297 Angiospermae flowering plants Arabidopsis thaliana & Brassica oleracea 58
(Arabidopsis)
510
(Brassica)		 tRNA‑???~~~   ? [L1] A   Lenoir 2001
SB4
(RAthE3, SN1)		159 Angiospermae flowering plants Arabidopsis thaliana 64 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB5
(Bos a, ab, b, ai)		162 Angiospermae flowering plants Arabidopsis thaliana & Brassica oleracea 7
(Arabidopsis) 645
(Brassica)		 tRNA‑???‑LINE~~~   ? [L1] A   Deragon 2006
SB6
(ATSINE4)		297 Angiospermae flowering plants Arabidopsis thaliana & Brassica oleracea 32
(Arabidopsis) 735
(Brassica)		 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB7352 Angiospermae flowering plants Arabidopsis thaliana & Brassica oleracea 3
(Arabidopsis) 210
(Brassica)		 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB895 Angiospermae flowering plants Brassica oleracea 215 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB9
(Bos c, f)		212 Angiospermae flowering plants Brassica oleracea 395 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB10
(Bos d, e)		159 Angiospermae flowering plants Brassica oleracea 455 tRNA‑???‑LINE~~~   ? [L1] A   Deragon 2006
SB11
(Bos G)		170 Angiospermae flowering plants Brassica oleracea 100 tRNA‑???~~~   ? [L1] A   Deragon 2006
SB12
(Bos i1)		170 Angiospermae flowering plants Brassica oleracea 150 tRNA‑???‑LINE~~~   ? [L1] A   Deragon 2006
SB13
(Bos i2)		225 Angiospermae flowering plants Brassica oleracea 55 tRNA‑???~~~ Pro ? [L1] A   Deragon 2006
SB14
(Bos j, k)		156 Angiospermae flowering plants Brassica oleracea 285 tRNA‑???~~~ Glu ? [L1] A   Deragon 2006
SB15
(Bos l)		206 Angiospermae flowering plants Brassica oleracea 40 tRNA‑???~~~   ? [L1] A   Deragon 2006
SBi-1
(SINE2-1_SBi)		 282 Angiospermae flowering plants Sorghum bicolor1×102 tRNA‑???~~~     T   Bao 2010
ScroS-I 210 Angiospermae flowering plants Common monkey-flower
(Mimulus guttatus)		 1×103
tRNA‑???~~~     A   Wenke 2011
Sepia312 Cephalopoda cephalopod molluscs cuttlefish
(Sepiida)		1.7×105 tRNA‑CORE‑???~~~       Ceph-domain Akasaki 2010
Sepioth1 292 Cephalopoda cephalopod molluscs Sepioteuthinae & Loliginidae 1.8×105 tRNA‑CORE‑???~~~       Ceph-domain Akasaki 2010
Sepioth2A293 Cephalopoda cephalopod molluscs Sepioteuthinae9×104 tRNA‑CORE‑???~~~       Ceph-domain Akasaki 2010
Sepioth2B229 Cephalopoda cephalopod molluscs Sepioteuthinae & Loliginidae9.4×104 tRNA‑CORE‑???~~~     (CCAAA)2CCA Ceph-domain Akasaki 2010
SINE type II
(GarnAlu)		 260 Mammalia mammals bush babies and lorises
(Lorisiformes)		3×105 tRNA~7SL~~~ Thr L1 [L1] A dimer Daniels 1983, Roos 2004
SINE type III
(Garnel1)		 78 Mammalia mammals bush babies and lorises
(Lorisiformes)		2×105 tRNA~~~   L1 [L1] A simple Daniels 1991, Roos 2004
Sine200
(SINEX-1/2)		190 Insecta insects mosquito Anopheles gambiae2×103 tRNA‑???~~~ Val   AAG   Holt 2002
SINE3
(AmnSINE1)		 561 Amniota Mammalia Aves Reptilia Amphibia amniotes mammals birds reptiles amphibians Amniota1×104
(zebrafish)		 5S‑tRNA‑CORE‑LINE~~~   ? [L2] ACATT
ATT		 dimer; Deu-domain; TSD– Kapitonov 2003, Nishihara 2006
SK241 Cephalopoda cephalopod molluscs squid
(Loligo bleekeri)		  0 tRNA‑???~~~ Lys Ile Ala Cys   ACTTT   Ohshima 1993
SlmI227 Actinopterygii ray-finned fishes Salmonoidei3×104 tRNA‑???‑LINE~~~   RSg-1 [L2] AT   Matveev 2007
SlmII465 Actinopterygii ray-finned fishes Salmonoidei1×104 tRNA‑???~~~     AT   Matveev 2007
Sma I
(Fok I, pol III/SINE, SMAIDIV, SINE_SM)		 150 Actinopterygii ray-finned fishes Salmonoidei1×102-
3×104		 tRNA‑???‑LINE~~~ Arg Thr Ala SalL2 [L2] AT   Kido 1991, Matveev 2009
Smα
(Sjα, T2)		 332 Trematoda parasitic flatworms Schistosomatidae1×103 tRNA‑???~~~ Arg   AT   Spotila 1989
SolS-I 179 Angiospermae flowering plants Solanaceae 2×103
(potato)
1.4×103
(N. benthamiana)
6.3×102
(tomato)		 tRNA‑tRNA‑???~~~     A dimer Wenke 2011
SolS-II
(SINE2-1_STu)		 216 Angiospermae flowering plants Solanaceae 1.7×103
(potato, tomato)
2.2×103
(N. benthamiana)		 tRNA‑???‑LINE~~~ Cys ? [L1] A   Wenke 2011
SolS-IIIa 231 Angiospermae flowering plants Solanaceae 1.3×103
(potato)
1×103
(tomato)		 tRNA‑???~~~     A   Wenke 2011
SolS-IIIb 246 Angiospermae flowering plants Solanaceae 1.6×102
(potato, N. benthamiana)
1×102
(tomato)		 tRNA‑???~~~     A   Wenke 2011
SolS-IV 193 Angiospermae flowering plants Solanaceae 1×103
(potato)
4.7×102
(N. benthamiana)
3.7×102
(tomato)		 tRNA‑???~~~     A   Wenke 2011
SolS-V 107 Angiospermae flowering plants Solanaceae 1.2×103
(potato)
5.4×102
(tomato)
4.3×102
(N. benthamiana)		 tRNA‑???~~~     A   Wenke 2011
SolS-VI 225 Angiospermae flowering plants Solanaceae 9.5×102
(N. benthamiana)
1×102
(potato)		 tRNA‑???‑LINE~~~   ? [L1] A   Wenke 2011
SolS-VII 211 Angiospermae flowering plants Solanaceae 3×102
(N. benthamiana)
3.4×101
(tomato)		 tRNA‑???‑LINE~~~ Tyr
? [L1] A   Wenke 2011
SOR157 Mammalia mammals shrews
(Soricidae)		1×105 tRNA‑???~~~ Ala Val L1 [L1] A quasidimer Borodulina 2001
SP-1
(SINE2-1_SP)		 246 Echinoidea sea urchins Strongylocentrotus purpuratus9.9×102 tRNA‑???~~~ Ile Val Thr Ala Gly   ATT   Kapitonov 2005
SP-2
(SINE2-2_SP)		 231 Echinoidea sea urchins Strongylocentrotus purpuratus2.9×102 tRNA‑???~~~ Ala Thr Gly Ile Val   ATT   Kapitonov 2005
SP-3
(SINE2-3_SP)		 353 Echinoidea sea urchins Strongylocentrotus purpuratus1.4×102 tRNA‑???‑CORE‑???~~~ Thr Gln Asn Phe Arg Ile Lys   GAA Deu-domain, α-domain Kapitonov 2005
SP-4
(SURF1, SINE2-4_SP)		 262 Echinoidea sea urchins Strongylocentrotus purpuratus2.1×103 tRNA‑CORE‑???~~~ Arg   ATT CORE domain Nisson 1988
SP-5
(SPEC1, SINE2-5_SP)		 225 Echinoidea sea urchins Strongylocentrotus purpuratus1.3×103 tRNA‑CORE‑???~~~ Arg   ATT CORE domain Carpenter 1982
SP-6
(SINE2-6_SP)		 342 Echinoidea sea urchins Strongylocentrotus purpuratus4.5×102 tRNA‑CORE‑???‑LINE~~~ Thr Lys Ile ? [L2] ATT CORE domain Kapitonov 2005
SP-7
(SINE2-7_SP)		 199 Echinoidea sea urchins Strongylocentrotus purpuratus4×103 tRNA‑???‑CORE‑???~~~     ACC α-domain Kapitonov 2005
SP-D-Geo
(DIPODE3)		 225 Mammalia mammals Geomyidae & Heteromyidae6.1×104 7SL~tRNA~~~   L1 [L1] A dimer Churakov 2010
Squam-2191 Reptilia reptiles scaled reptiles
(Squamata)		5.6×102
(anole)		 tRNA‑???~~~ Ala Lys Val Cys Tyr Phe Thr Gly   A   Grechko 2011
SS-1
(SINE1_SS, SUSINE2)		 121 Mammalia mammals pig
(Sus scrofa)		1.9×105 tRNA‑???~~~   L1 [L1] A   Jurka 2005
STRIDM199 Mammalia mammals thirteen-lined ground squirrel
(Spermophilus tridecemlineatus)		5.4×103 tRNA‑tRNA‑???~~~ Ala Val Gly Thr
Ala Val Gly		 L1 [L1] A dimer Bao 2010
TAL
(SINE_UT)		 237 Mammalia mammals moles
(Talpidae)		1×105 tRNA‑???~~~   L1 [L1] A (TC)n, T+ Borodulina 2001
Talua252 Insecta insects termites
(Isoptera)		1×105 tRNA‑???~~~ Leu   A   Luchetti 2009
Talub277 Insecta insects termites
(Isoptera)		2×104 tRNA‑???~~~ Glu   A   Luchetti 2011
Taluc387 Insecta insects termites
(Isoptera)		7.9×104 tRNA‑CORE‑???~~~ Ile   (GAA)n
(CAA)n
(CTAA)n
(TTA)n(TA)n		 quasidimer in H. sjoestedti; α-domain Luchetti 2011
Talud261 Insecta insects termites
(Isoptera)		6.3×104 tRNA‑???‑LINE~~~ Val Pro Thr ? [CR1] (CTTT)n   Luchetti 2011
TguSINE1124 Aves Estrildidae9.4×102 tRNA‑LINE~~~ Ile Lys Ala ? [CR1] RTTYTGTG   Smit 2009
Ther-1
(MIR)		 252 Vertebrata Mammalia Aves Reptilia vertebrates mammals birds reptiles mammals, birds & reptiles4×105
(human)
1×105
(mouse, rat)		 tRNA‑CORE‑LINE~~~ Cys L2 [L2] ATT CORE domain Smit 1995, Gilbert 2000
Ther-2
(MIR3)		 220 Mammalia mammals marsupials & placentals8×104
(human)		 tRNA‑CORE‑LINE~~~ Gly L3 [CR1] TCTATGA CORE domain Gilbert 2000, Jurka 2005
TS158 Angiospermae flowering plants Solanaceae & Convolvulacea5×104
(tobacco)		 tRNA‑???~~~ Ile Thr Met Asp Asn Val   TTG   Yoshioka 1993
Tu type I
(TUBE2, TUBE3, TUBE5)		 179 Mammalia mammals tree shrews
(Scandentia)		102 tRNA~7SL~~~   L1 [L1] A dimer; some with (TC)n Nishihara 2002
Tu type II
(TUBE4)		 278 Mammalia mammals tree shrews
(Scandentia)		102 tRNA~7SL~7SL~~~   L1 [L1] A trimer Nishihara 2002
Tu type III
(TUBE1, TUS)		 242 Mammalia mammals tree shrews
(Scandentia)		2×105 tRNA‑???~~~ Gly L1 [L1] A (R)n-(Y)n Nishihara 2002
TUB
(TUB1, TUB2, TUB3, TUB4)		 131 Mammalia mammals tree shrews
(Scandentia)		2.5×105 tRNA‑???~~~   L1 [L1] A (TC)n, T+ Jurka 2008
Twin 217 Insecta insects mosquito
(Culex spp.)		 5×102 tRNA‑???~tRNA~~~     A dimer; T+ Feschotte 2001
UCON3 168
Euteleostomi Mammalia Aves Reptilia Amphibia Sarcopterygii Actinopterygii vertebrates mammals birds reptiles amphibians lobe-finned fishes ray-finned fishes		 Euteleostomi102 tRNA‑???~~~     A   Jurka 2006
UnaSINE1208 Actinopterygii ray-finned fishes eel
(Anguilla japonica)		2.5×105 tRNA‑CORE‑LINE~~~ Tyr Arg UnaL2 [L2] TGTAA CORE domain; T+ Kajikawa 2002
VES
(Ves2, Ves3, Ves4)		 191 Mammalia mammals bat families Vespertilionidae, Molossidae, Phyllostomidae & Emballonuridae105 tRNA‑???~~~ Cys Ala Phe Tyr Ile Thr L1 [L1] A (TC)n, T+ Borodulina 1999
vic-1
(ALPINE1, ALPINE2, SINE_VV)		 117 Mammalia mammals Camelidae105 tRNA~~~ Ala Val Ile Thr Phe Lys Cys L1 [L1] A simple Lin 2001
VitaS-I 93 Angiospermae flowering plants grapevine
(Vitis vinifera)		 1.3×103
tRNA‑???~~~     A   Wenke 2011
WallSI4 233 Mammalia mammals wallaby
(Macropus eugenii)		1×105 tRNA‑CORE‑???~~~ Arg Gly   CCCTAT CORE domain Thompson 2006
Xt-1
(MIR_Xt)		 208 Amphibia amphibians Xenopus tropicalis4×105 tRNA‑CORE‑LINE~~~   ? [L2] T2-4C2-3 CORE domain Jurka 2005
Xt-2
(SINE2-1_XT)		 318 Amphibia amphibians Xenopus tropicalis6×102 tRNA‑CORE‑LINE~~~ Gly Ala ? [L2] A V-domain Jurka 2005
All SINE elements originally published in Repbase have been reproduced with permission from the Genetic Information Research Institute, which reserves all rights in the material.