Useful Links:
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Repbase update, a database of sequences representing repetitive DNA of different classes (including SINEs) from different eukaryotic species (Jurka 2005). |
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GeneDoc, a multiple sequence alignment editor (Windows only) with a highly convenient Find tool (F9) that allows fuzzy string search in the sequences. |
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Genomic tRNA Database, a database of tRNA genes and sequences from a variety of species (Juhling 2009). |
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mfold, a tool for predicting the secondary structure of RNA using thermodynamic methods. |